Book Chapter
Nguyen, Hien D. and Jones, Andrew Thomas (2019). Big data-appropriate clustering via stochastic approximation and Gaussian mixture models. Data analytics: concepts, techniques, and applications. (pp. 55-72) edited by Mohiuddin Ahmed and Al-Sakib Khan Pathan. Boca Raton, FL, United States: CRC Press. doi: 10.1201/9780429446177-3
Journal Articles
Davenport, Danielle, Butcher, Paul, Andreotti, Sara, Matthee, Conrad, Jones, Andrew and Ovenden, Jennifer (2021). Effective number of white shark (Carcharodon carcharias, Linnaeus) breeders is stable over four successive years in the population adjacent to eastern Australia and New Zealand. Ecology and Evolution, 11 (1), 186-198. doi: 10.1002/ece3.7007
Bagnall, Jessica J., Jones, Andrew T., Karavarsamis, Natalie and Nguyen, Hien D. (2020). The fully visible Boltzmann machine and the Senate of the 45th Australian Parliament in 2016. Journal of Computational Social Science, 3 (1), 55-81. doi: 10.1007/s42001-019-00055-7
Jones, Andrew T., Lavery, Shane D., Le Port, Agnès, Wang, You-Gan, Blower, Dean and Ovenden, Jennifer (2019). Sweepstakes reproductive success is absent in a New Zealand snapper (Chrysophrus auratus) population protected from fishing despite “tiny” Ne/N ratios elsewhere. Molecular Ecology, 28 (12), 2986-2995. doi: 10.1111/mec.15130
Jones, Andrew T., Bagnall, Jessica J. and Nguyen, Hien D. (2019). BoltzMM: an R package for maximum pseudolikelihood estimation of fully-visible Boltzmann machines. Journal of Open Source Software, 4 (34) 1193, 1193. doi: 10.21105/joss.01193
Morgan, Jess A. T., Sumpton, Wayne D., Jones, Andrew T., Campbell, Alexander B., Stewart, John, Hamer, Paul and Ovenden, Jennifer R. (2019). Assessment of genetic structure among Australian east coast populations of snapper chrysophrys auratus (sparidae). Marine and Freshwater Research, 70 (7), 964-976. doi: 10.1071/mf18146
Jones, Andrew T., Nguyen, Hien D. and McLachlan, Geoffrey J. (2018). logKDE: log-transformed kernel density estimation. Journal of Open Source Software, 3 (28) 870, 870. doi: 10.21105/joss.00870
Nguyen, Hien D., Jones, Andrew T. and McLachlan, Geoffrey J. (2018). Stream-suitable optimization algorithms for some soft-margin support vector machine variants. Japanese Journal of Statistics and Data Science., 1 (1), 81-108. doi: 10.1007/s42081-018-0001-y
Ovenden, J. R., Leigh, G. M., Blower, D. C., Jones, A. T., Moore, A., Bustamante, C., Buckworth, R. C., Bennett, M. B. and Dudgeon, C. L. (2016). Can estimates of genetic effective population size contribute to fisheries stock assessments?. Journal of Fish Biology, 89 (6), 2505-2518. doi: 10.1111/jfb.13129
Jones, A. T., Ovenden, J. R. and Wang, Y. -G. (2016). Improved confidence intervals for the linkage disequilibrium method for estimating effective population size. Heredity, 117 (4), 217-223. doi: 10.1038/hdy.2016.19
Conference Papers
Jones, Andrew T., Nguyen, Hien D. and McLachlan, Geoffrey J. (2019). Positive data kernel density estimation via the LogKDE package for R. AusDM 2018: 16th Australasian Conference on Data Mining, Bahrurst, NSW, Australia, 28 - 30 November 2018. Singapore, Singapore: Springer Singapore. doi: 10.1007/978-981-13-6661-1_21
Groeneveld, Erwin, Smallcombe, Katherine, Foster, Anna, Fraenkel, Alison and Jones, Andrew (2014). Ninety-seven eyes: the durability of individualised ranibizumab dosing for neovascular age-related macular degeneration in an Australian cohort: a seven year retrospective longitudinal study. The Royal Australian and New Zealand College of Ophthalmologists, 46th Annual Scientific Congress, Brisbane, QLD, Australia, 22–26 November 2014. Richmond, VIC, Australia: Wiley-Blackwell Publishing Asia. doi: 10.1111/ceo.12451
Thesis
Jones, Andrew (2017). Linkage Disequilibrium Estimates of Genetic Effective Population Size. PhD Thesis, School of Mathematics & Physics, The University of Queensland. doi: 10.14264/uql.2017.432